I have just installed Collect on Ubuntu 16.04 (all latest updates installed) following the instructions provided, but it does not start due to some permissions issue.
These are the folders created by the installer:
$-> ls -l
total 12340
4 drwxr-xr-x 2 user root 4096 mar 8 15:18 autoupdate/
4 -rw-r--r-- 1 user root 290 mar 8 15:18 collect.properties
4 drwxr-xr-x 2 root root 4096 mar 8 15:18 data/
4 drwxr-xr-x 2 user root 4096 mar 8 15:18 images/
4 drwxr-xr-x 6 user root 4096 mar 8 15:18 java/
4 drwxr-xr-x 2 user root 4096 mar 8 15:18 lib/
4 drwxr-xr-x 2 root root 4096 mar 8 15:18 logs/
6116 -rwxrwxr-x 1 user root 6259449 mar 8 15:18 OpenForisCollect-launcher.run*
4 -rw-r--r-- 1 user root 71 mar 8 15:18 OpenForisCollect-launcher.run.properties
6176 -rwx------ 1 user root 6323912 mar 8 15:18 uninstall*
12 -rw------- 1 root root 9011 mar 8 15:18 uninstall.dat
4 drwxr-xr-x 3 user root 4096 mar 8 15:19 webapps/
The full error message follows:
2019-03-08 15:20:09,970 JavaFX Application Thread ERROR Unable to create file logs/collect_server.log java.io.IOException: Permission denied
at java.io.UnixFileSystem.createFileExclusively(Native Method)
at java.io.File.createNewFile(File.java:1012)
at org.apache.logging.log4j.core.appender.rolling.RollingFileManager$RollingFileManagerFactory.createManager(RollingFileManager.java:628)
at org.apache.logging.log4j.core.appender.rolling.RollingFileManager$RollingFileManagerFactory.createManager(RollingFileManager.java:608)
at org.apache.logging.log4j.core.appender.AbstractManager.getManager(AbstractManager.java:113)
at org.apache.logging.log4j.core.appender.OutputStreamManager.getManager(OutputStreamManager.java:114)
at org.apache.logging.log4j.core.appender.rolling.RollingFileManager.getFileManager(RollingFileManager.java:188)
at org.apache.logging.log4j.core.appender.RollingFileAppender$Builder.build(RollingFileAppender.java:145)
at org.apache.logging.log4j.core.appender.RollingFileAppender$Builder.build(RollingFileAppender.java:61)
at org.apache.logging.log4j.core.config.plugins.util.PluginBuilder.build(PluginBuilder.java:123)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createPluginObject(AbstractConfiguration.java:959)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:899)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:891)
at org.apache.logging.log4j.core.config.AbstractConfiguration.doConfigure(AbstractConfiguration.java:514)
at org.apache.logging.log4j.core.config.AbstractConfiguration.initialize(AbstractConfiguration.java:238)
at org.apache.logging.log4j.core.config.AbstractConfiguration.start(AbstractConfiguration.java:250)
at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:547)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:619)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:636)
at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:231)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45)
at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194)
at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:581)
at org.openforis.collect.controlpanel.CollectControlPanelController.<clinit>(CollectControlPanelController.java:40)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at sun.reflect.misc.ReflectUtil.newInstance(ReflectUtil.java:51)
at javafx.fxml.FXMLLoader$ValueElement.processAttribute(FXMLLoader.java:927)
at javafx.fxml.FXMLLoader$InstanceDeclarationElement.processAttribute(FXMLLoader.java:971)
at javafx.fxml.FXMLLoader$Element.processStartElement(FXMLLoader.java:220)
at javafx.fxml.FXMLLoader$ValueElement.processStartElement(FXMLLoader.java:744)
at javafx.fxml.FXMLLoader.processStartElement(FXMLLoader.java:2707)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2527)
at javafx.fxml.FXMLLoader.load(FXMLLoader.java:2425)
at org.openforis.collect.controlpanel.CollectControlPanel.start(CollectControlPanel.java:36)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$162(LauncherImpl.java:863)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$175(PlatformImpl.java:326)
at com.sun.javafx.application.PlatformImpl.lambda$null$173(PlatformImpl.java:295)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$174(PlatformImpl.java:294)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
at com.sun.glass.ui.gtk.GtkApplication.lambda$null$49(GtkApplication.java:139)
at java.lang.Thread.run(Thread.java:745)
2019-03-08 15:20:09,973 JavaFX Application Thread ERROR Could not create plugin of type class org.apache.logging.log4j.core.appender.RollingFileAppender for element RollingFile: java.lang.IllegalStateException: ManagerFactory [org.apache.logging.log4j.core.appender.rolling.RollingFileManager$RollingFileManagerFactory@bd9a56c] unable to create manager for [logs/collect_server.log] with data [org.apache.logging.log4j.core.appender.rolling.RollingFileManager$FactoryData@7e665ef2[pattern=logs/${date:yyyy-MM}/collect_server-%d{MM-dd-yyyy}-%i.log.gz, append=true, bufferedIO=true, bufferSize=8192, policy=CompositeTriggeringPolicy(policies=[OnStartupTriggeringPolicy, TimeBasedTriggeringPolicy(nextRolloverMillis=0, interval=1, modulate=false), SizeBasedTriggeringPolicy(size=52428800)]), strategy=DefaultRolloverStrategy(min=1, max=20, useMax=true), advertiseURI=null, layout=%d %p %c [%t] %m%n, filePermissions=null, fileOwner=null]] java.lang.IllegalStateException: ManagerFactory [org.apache.logging.log4j.core.appender.rolling.RollingFileManager$RollingFileManagerFactory@bd9a56c] unable to create manager for [logs/collect_server.log] with data [org.apache.logging.log4j.core.appender.rolling.RollingFileManager$FactoryData@7e665ef2[pattern=logs/${date:yyyy-MM}/collect_server-%d{MM-dd-yyyy}-%i.log.gz, append=true, bufferedIO=true, bufferSize=8192, policy=CompositeTriggeringPolicy(policies=[OnStartupTriggeringPolicy, TimeBasedTriggeringPolicy(nextRolloverMillis=0, interval=1, modulate=false), SizeBasedTriggeringPolicy(size=52428800)]), strategy=DefaultRolloverStrategy(min=1, max=20, useMax=true), advertiseURI=null, layout=%d %p %c [%t] %m%n, filePermissions=null, fileOwner=null]]
at org.apache.logging.log4j.core.appender.AbstractManager.getManager(AbstractManager.java:115)
at org.apache.logging.log4j.core.appender.OutputStreamManager.getManager(OutputStreamManager.java:114)
at org.apache.logging.log4j.core.appender.rolling.RollingFileManager.getFileManager(RollingFileManager.java:188)
at org.apache.logging.log4j.core.appender.RollingFileAppender$Builder.build(RollingFileAppender.java:145)
at org.apache.logging.log4j.core.appender.RollingFileAppender$Builder.build(RollingFileAppender.java:61)
at org.apache.logging.log4j.core.config.plugins.util.PluginBuilder.build(PluginBuilder.java:123)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createPluginObject(AbstractConfiguration.java:959)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:899)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:891)
at org.apache.logging.log4j.core.config.AbstractConfiguration.doConfigure(AbstractConfiguration.java:514)
at org.apache.logging.log4j.core.config.AbstractConfiguration.initialize(AbstractConfiguration.java:238)
at org.apache.logging.log4j.core.config.AbstractConfiguration.start(AbstractConfiguration.java:250)
at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:547)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:619)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:636)
at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:231)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45)
at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194)
at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:581)
at org.openforis.collect.controlpanel.CollectControlPanelController.<clinit>(CollectControlPanelController.java:40)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at sun.reflect.misc.ReflectUtil.newInstance(ReflectUtil.java:51)
at javafx.fxml.FXMLLoader$ValueElement.processAttribute(FXMLLoader.java:927)
at javafx.fxml.FXMLLoader$InstanceDeclarationElement.processAttribute(FXMLLoader.java:971)
at javafx.fxml.FXMLLoader$Element.processStartElement(FXMLLoader.java:220)
at javafx.fxml.FXMLLoader$ValueElement.processStartElement(FXMLLoader.java:744)
at javafx.fxml.FXMLLoader.processStartElement(FXMLLoader.java:2707)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2527)
at javafx.fxml.FXMLLoader.load(FXMLLoader.java:2425)
at org.openforis.collect.controlpanel.CollectControlPanel.start(CollectControlPanel.java:36)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$162(LauncherImpl.java:863)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$175(PlatformImpl.java:326)
at com.sun.javafx.application.PlatformImpl.lambda$null$173(PlatformImpl.java:295)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$174(PlatformImpl.java:294)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
at com.sun.glass.ui.gtk.GtkApplication.lambda$null$49(GtkApplication.java:139)
at java.lang.Thread.run(Thread.java:745)
2019-03-08 15:20:09,975 JavaFX Application Thread ERROR Unable to invoke factory method in class org.apache.logging.log4j.core.appender.RollingFileAppender for element RollingFile: java.lang.IllegalStateException: No factory method found for class org.apache.logging.log4j.core.appender.RollingFileAppender java.lang.IllegalStateException: No factory method found for class org.apache.logging.log4j.core.appender.RollingFileAppender
at org.apache.logging.log4j.core.config.plugins.util.PluginBuilder.findFactoryMethod(PluginBuilder.java:235)
at org.apache.logging.log4j.core.config.plugins.util.PluginBuilder.build(PluginBuilder.java:135)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createPluginObject(AbstractConfiguration.java:959)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:899)
at org.apache.logging.log4j.core.config.AbstractConfiguration.createConfiguration(AbstractConfiguration.java:891)
at org.apache.logging.log4j.core.config.AbstractConfiguration.doConfigure(AbstractConfiguration.java:514)
at org.apache.logging.log4j.core.config.AbstractConfiguration.initialize(AbstractConfiguration.java:238)
at org.apache.logging.log4j.core.config.AbstractConfiguration.start(AbstractConfiguration.java:250)
at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:547)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:619)
at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:636)
at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:231)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153)
at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45)
at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194)
at org.apache.logging.log4j.LogManager.getLogger(LogManager.java:581)
at org.openforis.collect.controlpanel.CollectControlPanelController.<clinit>(CollectControlPanelController.java:40)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at sun.reflect.misc.ReflectUtil.newInstance(ReflectUtil.java:51)
at javafx.fxml.FXMLLoader$ValueElement.processAttribute(FXMLLoader.java:927)
at javafx.fxml.FXMLLoader$InstanceDeclarationElement.processAttribute(FXMLLoader.java:971)
at javafx.fxml.FXMLLoader$Element.processStartElement(FXMLLoader.java:220)
at javafx.fxml.FXMLLoader$ValueElement.processStartElement(FXMLLoader.java:744)
at javafx.fxml.FXMLLoader.processStartElement(FXMLLoader.java:2707)
at javafx.fxml.FXMLLoader.loadImpl(FXMLLoader.java:2527)
at javafx.fxml.FXMLLoader.load(FXMLLoader.java:2425)
at org.openforis.collect.controlpanel.CollectControlPanel.start(CollectControlPanel.java:36)
at com.sun.javafx.application.LauncherImpl.lambda$launchApplication1$162(LauncherImpl.java:863)
at com.sun.javafx.application.PlatformImpl.lambda$runAndWait$175(PlatformImpl.java:326)
at com.sun.javafx.application.PlatformImpl.lambda$null$173(PlatformImpl.java:295)
at java.security.AccessController.doPrivileged(Native Method)
at com.sun.javafx.application.PlatformImpl.lambda$runLater$174(PlatformImpl.java:294)
at com.sun.glass.ui.InvokeLaterDispatcher$Future.run(InvokeLaterDispatcher.java:95)
at com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
at com.sun.glass.ui.gtk.GtkApplication.lambda$null$49(GtkApplication.java:139)
at java.lang.Thread.run(Thread.java:745)
2019-03-08 15:20:09,975 JavaFX Application Thread ERROR Null object returned for RollingFile in Appenders.
2019-03-08 15:20:09,977 JavaFX Application Thread ERROR Unable to locate appender "rollingFileAppender" for logger config "root"
null/org/openforis/collect/controlpanel/of-collect-logo.png
null/org/openforis/collect/controlpanel/collect_control_panel.css
2019-03-08 15:20:10.191:INFO::pool-3-thread-1: Logging initialized @660ms to org.eclipse.jetty.util.log.StdErrLog
org.apache.commons.dbcp.SQLNestedException: Cannot create PoolableConnectionFactory (opening db: '/home/user/OpenForis/Collect/data/collect.db': Permission denied)
at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:1549)
at org.apache.commons.dbcp.BasicDataSource.createDataSource(BasicDataSource.java:1388)
at org.apache.commons.dbcp.BasicDataSource.getLogWriter(BasicDataSource.java:1098)
at org.apache.commons.dbcp.BasicDataSourceFactory.createDataSource(BasicDataSourceFactory.java:350)
at org.openforis.collect.controlpanel.JettyApplicationServer.registerDbJndiResource(JettyApplicationServer.java:179)
at org.openforis.collect.controlpanel.JettyApplicationServer.registerWebapps(JettyApplicationServer.java:104)
at org.openforis.collect.controlpanel.JettyApplicationServer.start(JettyApplicationServer.java:71)
at org.openforis.collect.controlpanel.CollectControlPanelController.lambda$startServer$2(CollectControlPanelController.java:180)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.sql.SQLException: opening db: '/home/user/OpenForis/Collect/data/collect.db': Permission denied
at org.sqlite.SQLiteConnection.open(SQLiteConnection.java:226)
at org.sqlite.SQLiteConnection.<init>(SQLiteConnection.java:61)
at org.sqlite.jdbc3.JDBC3Connection.<init>(JDBC3Connection.java:28)
at org.sqlite.jdbc4.JDBC4Connection.<init>(JDBC4Connection.java:21)
at org.sqlite.JDBC.createConnection(JDBC.java:116)
at org.sqlite.JDBC.connect(JDBC.java:90)
at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:582)
at org.apache.commons.dbcp.BasicDataSource.validateConnectionFactory(BasicDataSource.java:1556)
at org.apache.commons.dbcp.BasicDataSource.createPoolableConnectionFactory(BasicDataSource.java:1545)
... 14 more
